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Hla-mapper: An application to optimize the mapping of HLA sequences produced by massively parallel sequencing procedures

This manuscript describes the hla-mapper software, a tool to optimize mappings of HLA-related reads.

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MHC Variants Associated With Symptomatic Versus Asymptomatic SARS-CoV-2 Infection in Highly Exposed Individuals

Here we detected MICA, MICB, HLA-DOB, and HLA-DRB1 polymorphisms associated with SARs-CoV-2 infection susceptibility and protection studying highly exposed individuals.

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Publications (2020-2024)

  1. HLA-B alleles associated with frontal fibrosing alopecia in Brazil may share similar peptide presentation and T-cell interaction profiles. J Eur Acad Dermatol Venereol (2024). Follow!
  2. Optimal population-specific HLA imputation with dimension reduction. HLA (2024). Follow!
  3. 18th International HLA and Immunogenetics Workshop: Report on the SNP-HLA Reference Consortium (SHLARC) component. HLA (2024). Follow!
  4. HLA-G Gene Variability Is Associated with Papillary Thyroid Carcinoma Morbidity and the HLA-G Protein Profile. Int J Mol Sci. (2023). Follow!
  5. The + 3010/C single nucleotide polymorphism (rs1710) at the HLA-G 3' untranslated region is associated with a short transcript exhibiting a deletion of 92 nucleotides. Immunogenetics (2023). Follow!
  6. Evidence for Epistatic Interaction between HLA-G and LILRB1 in the Pathogenesis of Nonsegmental Vitiligo. Cells (2023). Follow!
  7. Immunological evaluation of young unvaccinated patients with Turner syndrome after COVID-19. Int J Infect Dis (2023). Follow!
  8. Computational and atomistic studies applied to the understanding of the structural and behavioral features of the immune checkpoint HLA-G molecule and gene. Hum Immunol (2023). Follow!
  9. Comparison between qPCR and RNA-seq reveals challenges of quantifying HLA expression. Immunogenetics (2023). Follow!
  10. MUC22, HLA-A, and HLA-DOB variants and COVID-19 in resilient super-agers from Brazil. Front Immunol (2022). Follow!
  11. The oldest unvaccinated Covid-19 survivors in South America. Immun Ageing (2022). Follow!
  12. Follow-up of young adult monozygotic twins after simultaneous critical coronavirus disease 2019: A case report. Front Med (Lausanne, 2022).  Follow!
  13. Genetic diversity of the LILRB1 and LILRB2 coding regions in an admixed Brazilian population sample. HLA (2022). Follow!
  14. How HLA diversity is apportioned: influence of selection and relevance to transplantation. Philos Trans R Soc Lond B Biol Sci (2022). Follow!
  15. Whole-genome sequencing of 1,171 elderly admixed individuals from São Paulo, Brazil. Nat Commun (2022). Follow!
  16. Analysis and comparison of the STR genotypes called with HipSTR, STRait Razor and toaSTR by using next generation sequencing data in a Brazilian population sample. Forensic Sci Int Genet (2022). Follow!
  17. Recurrence of COVID-19 associated with reduced T-cell responses in a monozygotic twin pair. Open Biol (2022). Follow!
  18. Approaching Genetics Through the MHC Lens: Tools and Methods for HLA Research. Front Genet (2021). Follow!
  19. Current HLA Investigations on SARS-CoV-2 and Perspectives. Front Genet (2021). Follow!
  20. HLA-G genetic diversity and evolutive aspects in worldwide populations. Sci Rep. (2021). Follow!
  21. MHC Variants Associated With Symptomatic Versus Asymptomatic SARS-CoV-2 Infection in Highly Exposed Individuals. Front Immunol (2021). Follow!
  22. An immunogenetic view of COVID-19. Genet Mol Biol. 2021. Follow!
  23. Prediction of eye and hair pigmentation phenotypes using the HIrisPlex system in a Brazilian admixed population sample. Int J Legal Med (2021). Follow!
  24. HLA-E gene polymorphisms in chronic hepatitis C: Impact on HLA-E liver expression and disease severity. Hum Immunol (2021). Follow!
  25. Peripheral spectrum neurological disorder after arbovirus infection is associated with HLA-F variants among Northeastern Brazilians. Infect Genet Evol (2021) Follow! 
  26. Human leukocyte antigen (HLA)-F and -G gene polymorphisms and haplotypes are associated with malaria susceptibility in the Beninese Toffin children. Infect Genet Evol (2021) Follow!
  27. Relevance of PD-L1 Non-Coding Polymorphisms on the Prognosis of a Genetically Admixed NSCLC Cohort. Pharmgenomics Pers Med (2021). Follow!
  28. KIR2DL4 genetic diversity in a Brazilian population sample: implications for transcription regulation and protein diversity in samples with different ancestry backgrounds. Immunogenetics (2021). Follow!
  29. Emerging role of PTEN loss in evasion of the immune response to tumours. Br J Cancer (2020). Follow!
  30. Variability at the 3' untranslated region of the HLA-G gene: a study on patients with AIDS and cytomegalovirus retinochoroiditis. Sci Rep (2020). Follow!
  31. Manifesting carriers of X-linked myotubular myopathy: Genetic modifiers modulating the phenotype. Neurol Genet (2020). Follow!
  32. SNP-HLA Reference Consortium (SHLARC): HLA and SNP data sharing for promoting MHC-centric analyses in genomics. Genet Epidemiol (2020 ) Follow!
  33. HLA-C genetic diversity and evolutionary insights in two samples from Brazil and Benin. HLA (2020) Follow!
  34. Insights on hair, skin and eye color of ancient and contemporary Native Americans.  Forensic Sci Int Genet (2020)  Follow!
  35. HLA-G liver expression and HLA-G extended haplotypes are associated with chronic hepatitis C in HIV-negative and HIV-coinfected patients. Clin Immunol (2020). Follow!
  36. A large familial cluster and sporadic cases of frontal fibrosing alopecia in Brazil reinforce known human leucocyte antigen (HLA) associations and indicate new HLA susceptibility haplotypes. J Eur Acad Dermatol Venereol (2020) Follow!

Complete list of publications

Please follow this PubMed link for a complete list of publications: Follow!

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